MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Borrelia afzelii PKo plasmid cp30

Total Repeats: 125

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_008273	TC	3	6	919	924	0 %	50 %	0 %	50 %	Non-Coding
2	NC_008273	AAG	2	6	926	931	66.67 %	0 %	33.33 %	0 %	Non-Coding
3	NC_008273	TTC	2	6	932	937	0 %	66.67 %	0 %	33.33 %	Non-Coding
4	NC_008273	TCT	2	6	954	959	0 %	66.67 %	0 %	33.33 %	Non-Coding
5	NC_008273	T	6	6	1588	1593	0 %	100 %	0 %	0 %	Non-Coding
6	NC_008273	TA	3	6	1599	1604	50 %	50 %	0 %	0 %	Non-Coding
7	NC_008273	TA	3	6	1608	1613	50 %	50 %	0 %	0 %	Non-Coding
8	NC_008273	A	6	6	1634	1639	100 %	0 %	0 %	0 %	Non-Coding
9	NC_008273	CCT	2	6	2462	2467	0 %	33.33 %	0 %	66.67 %	Non-Coding
10	NC_008273	ATT	2	6	2503	2508	33.33 %	66.67 %	0 %	0 %	Non-Coding
11	NC_008273	AAT	2	6	2533	2538	66.67 %	33.33 %	0 %	0 %	Non-Coding
12	NC_008273	AAAC	2	8	4321	4328	75 %	0 %	0 %	25 %	Non-Coding
13	NC_008273	TA	3	6	4372	4377	50 %	50 %	0 %	0 %	Non-Coding
14	NC_008273	TTA	2	6	4394	4399	33.33 %	66.67 %	0 %	0 %	Non-Coding
15	NC_008273	TTGA	2	8	4617	4624	25 %	50 %	25 %	0 %	Non-Coding
16	NC_008273	AGT	2	6	4625	4630	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
17	NC_008273	AT	3	6	4671	4676	50 %	50 %	0 %	0 %	Non-Coding
18	NC_008273	TA	3	6	4725	4730	50 %	50 %	0 %	0 %	Non-Coding
19	NC_008273	TAT	2	6	4756	4761	33.33 %	66.67 %	0 %	0 %	Non-Coding
20	NC_008273	TCC	2	6	12817	12822	0 %	33.33 %	0 %	66.67 %	Non-Coding
21	NC_008273	CCT	2	6	13412	13417	0 %	33.33 %	0 %	66.67 %	Non-Coding
22	NC_008273	TTA	2	6	16720	16725	33.33 %	66.67 %	0 %	0 %	Non-Coding
23	NC_008273	TG	3	6	16729	16734	0 %	50 %	50 %	0 %	Non-Coding
24	NC_008273	CTT	2	6	18136	18141	0 %	66.67 %	0 %	33.33 %	Non-Coding
25	NC_008273	ATT	2	6	18665	18670	33.33 %	66.67 %	0 %	0 %	Non-Coding
26	NC_008273	ATA	2	6	18678	18683	66.67 %	33.33 %	0 %	0 %	Non-Coding
27	NC_008273	TAA	2	6	18692	18697	66.67 %	33.33 %	0 %	0 %	Non-Coding
28	NC_008273	TTA	2	6	18699	18704	33.33 %	66.67 %	0 %	0 %	Non-Coding
29	NC_008273	ATT	2	6	18719	18724	33.33 %	66.67 %	0 %	0 %	Non-Coding
30	NC_008273	CTG	2	6	18737	18742	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
31	NC_008273	TTA	3	9	18760	18768	33.33 %	66.67 %	0 %	0 %	Non-Coding
32	NC_008273	AT	3	6	18788	18793	50 %	50 %	0 %	0 %	Non-Coding
33	NC_008273	CAA	2	6	19533	19538	66.67 %	0 %	0 %	33.33 %	Non-Coding
34	NC_008273	ATTT	2	8	19585	19592	25 %	75 %	0 %	0 %	Non-Coding
35	NC_008273	TCT	2	6	19603	19608	0 %	66.67 %	0 %	33.33 %	Non-Coding
36	NC_008273	TAA	2	6	19620	19625	66.67 %	33.33 %	0 %	0 %	Non-Coding
37	NC_008273	ATT	2	6	19628	19633	33.33 %	66.67 %	0 %	0 %	Non-Coding
38	NC_008273	TTTAAA	2	12	19646	19657	50 %	50 %	0 %	0 %	Non-Coding
39	NC_008273	CCT	2	6	20174	20179	0 %	33.33 %	0 %	66.67 %	Non-Coding
40	NC_008273	TAT	2	6	20185	20190	33.33 %	66.67 %	0 %	0 %	Non-Coding
41	NC_008273	TTA	2	6	20234	20239	33.33 %	66.67 %	0 %	0 %	Non-Coding
42	NC_008273	ATT	2	6	20903	20908	33.33 %	66.67 %	0 %	0 %	Non-Coding
43	NC_008273	AATGC	2	10	21504	21513	40 %	20 %	20 %	20 %	Non-Coding
44	NC_008273	TAA	2	6	21515	21520	66.67 %	33.33 %	0 %	0 %	Non-Coding
45	NC_008273	T	8	8	21527	21534	0 %	100 %	0 %	0 %	Non-Coding
46	NC_008273	TC	3	6	21617	21622	0 %	50 %	0 %	50 %	Non-Coding
47	NC_008273	CAAAT	2	10	21667	21676	60 %	20 %	0 %	20 %	Non-Coding
48	NC_008273	TA	3	6	21691	21696	50 %	50 %	0 %	0 %	Non-Coding
49	NC_008273	TCTT	2	8	21714	21721	0 %	75 %	0 %	25 %	Non-Coding
50	NC_008273	T	6	6	21817	21822	0 %	100 %	0 %	0 %	Non-Coding
51	NC_008273	TA	3	6	21852	21857	50 %	50 %	0 %	0 %	Non-Coding
52	NC_008273	TTACTT	2	12	21864	21875	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
53	NC_008273	A	6	6	23043	23048	100 %	0 %	0 %	0 %	Non-Coding
54	NC_008273	TTGTT	2	10	23088	23097	0 %	80 %	20 %	0 %	Non-Coding
55	NC_008273	TAA	2	6	23107	23112	66.67 %	33.33 %	0 %	0 %	Non-Coding
56	NC_008273	T	6	6	23116	23121	0 %	100 %	0 %	0 %	Non-Coding
57	NC_008273	T	7	7	23142	23148	0 %	100 %	0 %	0 %	Non-Coding
58	NC_008273	T	6	6	23151	23156	0 %	100 %	0 %	0 %	Non-Coding
59	NC_008273	TAAA	3	12	24516	24527	75 %	25 %	0 %	0 %	Non-Coding
60	NC_008273	T	6	6	24551	24556	0 %	100 %	0 %	0 %	Non-Coding
61	NC_008273	A	10	10	24571	24580	100 %	0 %	0 %	0 %	Non-Coding
62	NC_008273	AAT	2	6	24644	24649	66.67 %	33.33 %	0 %	0 %	Non-Coding
63	NC_008273	T	9	9	24656	24664	0 %	100 %	0 %	0 %	Non-Coding
64	NC_008273	TA	3	6	24667	24672	50 %	50 %	0 %	0 %	Non-Coding
65	NC_008273	TA	4	8	24677	24684	50 %	50 %	0 %	0 %	Non-Coding
66	NC_008273	T	6	6	24699	24704	0 %	100 %	0 %	0 %	Non-Coding
67	NC_008273	TTAT	2	8	24711	24718	25 %	75 %	0 %	0 %	Non-Coding
68	NC_008273	A	7	7	24730	24736	100 %	0 %	0 %	0 %	Non-Coding
69	NC_008273	CCA	2	6	24779	24784	33.33 %	0 %	0 %	66.67 %	Non-Coding
70	NC_008273	TTTAT	2	10	24795	24804	20 %	80 %	0 %	0 %	Non-Coding
71	NC_008273	AT	3	6	24803	24808	50 %	50 %	0 %	0 %	Non-Coding
72	NC_008273	TAT	2	6	24838	24843	33.33 %	66.67 %	0 %	0 %	Non-Coding
73	NC_008273	A	6	6	24876	24881	100 %	0 %	0 %	0 %	Non-Coding
74	NC_008273	A	7	7	24888	24894	100 %	0 %	0 %	0 %	Non-Coding
75	NC_008273	CTA	2	6	24915	24920	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
76	NC_008273	CACT	2	8	24937	24944	25 %	25 %	0 %	50 %	Non-Coding
77	NC_008273	AT	5	10	24986	24995	50 %	50 %	0 %	0 %	Non-Coding
78	NC_008273	T	8	8	25022	25029	0 %	100 %	0 %	0 %	Non-Coding
79	NC_008273	A	7	7	25030	25036	100 %	0 %	0 %	0 %	Non-Coding
80	NC_008273	CAA	2	6	25039	25044	66.67 %	0 %	0 %	33.33 %	Non-Coding
81	NC_008273	A	7	7	25090	25096	100 %	0 %	0 %	0 %	Non-Coding
82	NC_008273	T	6	6	25170	25175	0 %	100 %	0 %	0 %	Non-Coding
83	NC_008273	TCA	2	6	25184	25189	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
84	NC_008273	TATAA	2	10	25194	25203	60 %	40 %	0 %	0 %	Non-Coding
85	NC_008273	A	6	6	25210	25215	100 %	0 %	0 %	0 %	Non-Coding
86	NC_008273	T	6	6	25228	25233	0 %	100 %	0 %	0 %	Non-Coding
87	NC_008273	CCT	2	6	26335	26340	0 %	33.33 %	0 %	66.67 %	Non-Coding
88	NC_008273	T	6	6	28787	28792	0 %	100 %	0 %	0 %	Non-Coding
89	NC_008273	TAA	3	9	28812	28820	66.67 %	33.33 %	0 %	0 %	Non-Coding
90	NC_008273	A	7	7	28864	28870	100 %	0 %	0 %	0 %	Non-Coding
91	NC_008273	TTA	2	6	28871	28876	33.33 %	66.67 %	0 %	0 %	Non-Coding
92	NC_008273	ATT	2	6	28884	28889	33.33 %	66.67 %	0 %	0 %	Non-Coding
93	NC_008273	TTAAT	2	10	28897	28906	40 %	60 %	0 %	0 %	Non-Coding
94	NC_008273	ATA	2	6	29028	29033	66.67 %	33.33 %	0 %	0 %	Non-Coding
95	NC_008273	T	7	7	29083	29089	0 %	100 %	0 %	0 %	Non-Coding
96	NC_008273	A	6	6	29104	29109	100 %	0 %	0 %	0 %	Non-Coding
97	NC_008273	TA	3	6	29131	29136	50 %	50 %	0 %	0 %	Non-Coding
98	NC_008273	TTTA	2	8	29137	29144	25 %	75 %	0 %	0 %	Non-Coding
99	NC_008273	AGG	2	6	29154	29159	33.33 %	0 %	66.67 %	0 %	Non-Coding
100	NC_008273	A	7	7	29181	29187	100 %	0 %	0 %	0 %	Non-Coding
101	NC_008273	ATA	2	6	29202	29207	66.67 %	33.33 %	0 %	0 %	Non-Coding
102	NC_008273	A	6	6	29332	29337	100 %	0 %	0 %	0 %	Non-Coding
103	NC_008273	TTA	2	6	29340	29345	33.33 %	66.67 %	0 %	0 %	Non-Coding
104	NC_008273	TGT	2	6	29416	29421	0 %	66.67 %	33.33 %	0 %	Non-Coding
105	NC_008273	AAT	2	6	29501	29506	66.67 %	33.33 %	0 %	0 %	Non-Coding
106	NC_008273	AAGTG	2	10	29605	29614	40 %	20 %	40 %	0 %	Non-Coding
107	NC_008273	AAT	2	6	29639	29644	66.67 %	33.33 %	0 %	0 %	Non-Coding
108	NC_008273	CAA	2	6	29668	29673	66.67 %	0 %	0 %	33.33 %	Non-Coding
109	NC_008273	ATCA	2	8	29684	29691	50 %	25 %	0 %	25 %	Non-Coding
110	NC_008273	AGAACA	2	12	29692	29703	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
111	NC_008273	A	7	7	29703	29709	100 %	0 %	0 %	0 %	Non-Coding
112	NC_008273	A	8	8	29715	29722	100 %	0 %	0 %	0 %	Non-Coding
113	NC_008273	ATTA	2	8	29726	29733	50 %	50 %	0 %	0 %	Non-Coding
114	NC_008273	A	7	7	29741	29747	100 %	0 %	0 %	0 %	Non-Coding
115	NC_008273	TAA	2	6	29748	29753	66.67 %	33.33 %	0 %	0 %	Non-Coding
116	NC_008273	AAC	2	6	29759	29764	66.67 %	0 %	0 %	33.33 %	Non-Coding
117	NC_008273	A	6	6	29789	29794	100 %	0 %	0 %	0 %	Non-Coding
118	NC_008273	A	6	6	29822	29827	100 %	0 %	0 %	0 %	Non-Coding
119	NC_008273	A	6	6	29842	29847	100 %	0 %	0 %	0 %	Non-Coding
120	NC_008273	ATA	2	6	29874	29879	66.67 %	33.33 %	0 %	0 %	Non-Coding
121	NC_008273	ATT	2	6	29888	29893	33.33 %	66.67 %	0 %	0 %	Non-Coding
122	NC_008273	A	6	6	29895	29900	100 %	0 %	0 %	0 %	Non-Coding
123	NC_008273	AAT	2	6	29927	29932	66.67 %	33.33 %	0 %	0 %	Non-Coding
124	NC_008273	TGA	2	6	29935	29940	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
125	NC_008273	TTA	2	6	29973	29978	33.33 %	66.67 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.